1. Introduction
3. User Guide
4. 1. Getting started
5. 1. 1.1. Installation
   2. 1.2. Developing
   3. 1.3. Deploying
7. Reference Guide
8. 2. Phymes-core
9. 1. 2.1. Algorithm
   2. 2.2. Glossary
   3. 2.3. Example: single source shortest path (SSSP)
   4. 2.4. Example: biological network simulator
   5. 2.5. Example: agentic AI
10. 3. Phymes-agents
11. 1. 3.1. Model assets
    2. 3.2. Session plan: chat agent
    3. 3.3. Session plan: tool agent
    4. 3.4. Session plan: RAG agent
12. 4. Phymes-server
13. 1. 4.1. Tutorial
14. 5. Phymes-app
15. 1. 5.1. User Interface (UI)